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Sample GSM2070630 Query DataSets for GSM2070630
Status Public on Apr 01, 2016
Title mock-24h-1
Sample type RNA
 
Source name mock 24h
Organism Oryza sativa
Characteristics cultivar: Nipponbare
tissue: 4th leaves at 4-leaf stage
Treatment protocol 10 mM glutamate from roots
Extracted molecule total RNA
Extraction protocol Total RNA was isolated using Trizol and cleaned up with an RNeasy plant mini kit (Qiagen).
Label Cy3
Label protocol The RNAs (400-ng aliquots) were labeled with a Low RNA Input Linear Amplification/Labeling Kit (Agilent Technologies)
 
Hybridization protocol Agilent protocol G4140-90040
Scan protocol Slides were scanned immediately after washing on Agilent Scanner model G2505B and software G2565BA using default parameters
Description SAMPLE 5
Data processing The scanned images were analyzed with Feature Extraction software (version 9.1; Agilent Technologies) using default parameters.
 
Submission date Feb 24, 2016
Last update date Apr 02, 2016
Contact name Hiroshi Takatsuji
E-mail(s) takatsuh@affrc.go.jp
Organization name National Institute of Agrobiological Sciences
Department Division of Plant Sciences
Lab Plant Disease Resistance Research Unit
Street address 2-1-2 Kannondai
City Tsukuba
State/province Ibaraki
ZIP/Postal code 305-8602
Country Japan
 
Platform ID GPL8852
Series (1)
GSE78266 Rice genes responsive to Glu

Data table header descriptions
ID_REF
VALUE Normalized signal intensity

Data table
ID_REF VALUE
Os03g0146300|mRNA|AK121395|CDS+3'UTR -1.5578097
Os03g0100100|COMBINER|CI224620|6 0.3872813
Os06g0591200|mRNA|AK062563|CDS+3'UTR 0.45468676
Os01g0658400|mRNA|AK099284|CDS+3'UTR 1.1485786
Os01g0388500|COMBINER_EST|Os01g0388500|8 -0.3845504
Os12g0403800|mRNA|AK059940|CDS+3'UTR -1.1123614
Os07g0572000|mRNA|AK111653|CDS+3'UTR -0.38311017
Os06g0530200|mRNA|AK073116|CDS+3'UTR 0.15921378
Os02g0149500|mRNA|AK109901|CDS+3'UTR -1.121449
Os02g0187300|mRNA|AK062633|UTR 0.29795158
Os09g0546900|mRNA|AK062365|CDS+3'UTR 4.84427
Os04g0308100|mRNA|AK108495|CDS+3'UTR 1.1828682
Os03g0194500|COMBINER_EST|CI391251|0 0.089352965
Os08g0555800|COMBINER_EST|Os08g0555800|8 0.35222578
Os10g0522900|mRNA|AK068314|CDS+3'UTR 0.19456506
Os01g0871100|mRNA|AK064743|CDS+3'UTR 0.87577647
Os06g0561800|COMBINER_EST|Os06g0561800|8 0.30298746
Os03g0684000|mRNA|AK105025|CDS+3'UTR 0.22002876
Os07g0664600|mRNA|AK105211|CDS+3'UTR 0.31834745
Os04g0484300|COMBINER|CI434770|6 3.2083561

Total number of rows: 42537

Table truncated, full table size 1979 Kbytes.




Supplementary file Size Download File type/resource
GSM2070630_mock-24h-1.txt.gz 7.6 Mb (ftp)(http) TXT
Processed data included within Sample table
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