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Sample GSM1886906 Query DataSets for GSM1886906
Status Public on Mar 31, 2016
Title W62-kd 0h
Sample type RNA
 
Source name WRKY62-kd rice
Organism Oryza sativa
Characteristics genotype/variation: WRKY62-kd
developmental stage: 3-leaf stage
tissue: seedling
treated with: none for 0hr
Treatment protocol Rice plants at 3-leaf stage were supplied with BTH solutin (30 µM at a final concentration) into the culture medium.
Growth protocol Rice seeds were germinated on MS plates. Seedlings were grown in a plastic box containing 1/1000 hyponex culture medium.
Extracted molecule total RNA
Extraction protocol Total RNA was isolated using Trizol and cleand up with an RNeasy plant mini kit (Qiagen).
Label Cy3
Label protocol The RNAs (400-ng aliquots) were labeled with a Low RNA Input Linear Amplification/Labeling Kit (Agilent Technologies).
 
Hybridization protocol Agilent protocol G4140-90040
Scan protocol Slides were scanned immediately after washing on Agilent Scanner model G2505B and sofware G2565BA using default parameters.
Description SAMPLE 2
Data processing The scanned imags were analized with Feature Extraction software (version 9.1; Agilent Technologies) using default parameters. The measurements were normalized to their mean.
 
Submission date Sep 17, 2015
Last update date Mar 31, 2016
Contact name Hiroshi Takatsuji
E-mail(s) takatsuh@affrc.go.jp
Organization name National Institute of Agrobiological Sciences
Department Division of Plant Sciences
Lab Plant Disease Resistance Research Unit
Street address 2-1-2 Kannondai
City Tsukuba
State/province Ibaraki
ZIP/Postal code 305-8602
Country Japan
 
Platform ID GPL8852
Series (1)
GSE73113 The BTH-incuced WRKY62-dependent genes

Data table header descriptions
ID_REF
VALUE log2 normalized

Data table
ID_REF VALUE
Os03g0146300|mRNA|AK121395|CDS+3'UTR -0.15778
Os03g0100100|COMBINER|CI224620|6 0.29929
Os06g0591200|mRNA|AK062563|CDS+3'UTR -1.68548
Os01g0658400|mRNA|AK099284|CDS+3'UTR -0.25648
Os01g0388500|COMBINER_EST|Os01g0388500|8 -0.60710
Os12g0403800|mRNA|AK059940|CDS+3'UTR -0.46198
Os07g0572000|mRNA|AK111653|CDS+3'UTR 0.13337
Os06g0530200|mRNA|AK073116|CDS+3'UTR 0.12240
Os02g0149500|mRNA|AK109901|CDS+3'UTR 0.29206
Os02g0187300|mRNA|AK062633|UTR 0.72219
Os09g0546900|mRNA|AK062365|CDS+3'UTR -0.37950
Os04g0308100|mRNA|AK108495|CDS+3'UTR -1.48791
Os03g0194500|COMBINER_EST|CI391251|0 0.25098
Os08g0555800|COMBINER_EST|Os08g0555800|8 -0.09785
Os10g0522900|mRNA|AK068314|CDS+3'UTR -0.23338
Os01g0871100|mRNA|AK064743|CDS+3'UTR 0.24548
Os06g0561800|COMBINER_EST|Os06g0561800|8 0.06343
Os03g0684000|mRNA|AK105025|CDS+3'UTR 0.02827
Os07g0664600|mRNA|AK105211|CDS+3'UTR -0.94370
Os04g0484300|COMBINER|CI434770|6 0.06769

Total number of rows: 42537

Table truncated, full table size 1872 Kbytes.




Supplementary file Size Download File type/resource
GSM1886906_W62-kd_0hr.txt.gz 7.7 Mb (ftp)(http) TXT
Processed data included within Sample table
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