|
Status |
Public on Aug 03, 2015 |
Title |
Placenta_GDM_Yes_Sample60 |
Sample type |
genomic |
|
|
Source name |
Placenta tissue from the maternal (decidual basalis) side near the umbilical cord
|
Organism |
Homo sapiens |
Characteristics |
tissue: placenta gestational diabetes: Yes
|
Extracted molecule |
genomic DNA |
Extraction protocol |
DNA was isolated from placenta tissue using the QIAmp DNA Mini Kit (Qiagen) according to manufacturer’s instruction
|
Label |
Cy5 and Cy3
|
Label protocol |
Standard Illumina Protocol
|
|
|
Hybridization protocol |
Bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium HumanMethylation450 Beadchip using standard Illumina protocol
|
Scan protocol |
Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
|
Description |
chart-reported case of gestational diabetes
|
Data processing |
Color bias adjustment and quantile normalization was performed on signal intensities, adjustment for probe-type bias was performed on the beta-values using beta-mixture quantile normalization (BMIQ) Unmethylated and methylated signal intensities in Series supplementary file
|
|
|
Submission date |
Jul 01, 2015 |
Last update date |
Mar 25, 2019 |
Contact name |
Alexandra Binder |
Organization name |
University of California Los Angeles
|
Department |
Department of Epidemiology
|
Street address |
650 Charles Young Drive, South
|
City |
Los Angeles |
State/province |
California |
ZIP/Postal code |
90095 |
Country |
USA |
|
|
Platform ID |
GPL13534 |
Series (2) |
GSE70453 |
Epigenome-wide and Transcriptome-wide Analyses Reveal Gestational Diabetes is Associated with Alterations in the Human Leukocyte Antigen Complex [methylation] |
GSE70494 |
Epigenome-wide and Transcriptome-wide Analyses Reveal Gestational Diabetes is Associated with Alterations in the Human Leukocyte Antigen Complex |
|
Relations |
Reanalyzed by |
GSE128827 |