|
| Status |
Public on Aug 03, 2015 |
| Title |
Placenta_GDM_No_Sample57 |
| Sample type |
genomic |
| |
|
| Source name |
Placenta tissue from the maternal (decidual basalis) side near the umbilical cord
|
| Organism |
Homo sapiens |
| Characteristics |
tissue: placenta
gestational diabetes: No
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
DNA was isolated from placenta tissue using the QIAmp DNA Mini Kit (Qiagen) according to manufacturer’s instruction
|
| Label |
Cy5 and Cy3
|
| Label protocol |
Standard Illumina Protocol
|
| |
|
| Hybridization protocol |
Bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium HumanMethylation450 Beadchip using standard Illumina protocol
|
| Scan protocol |
Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
|
| Description |
pregnancy without maternal complications
|
| Data processing |
Color bias adjustment and quantile normalization was performed on signal intensities, adjustment for probe-type bias was performed on the beta-values using beta-mixture quantile normalization (BMIQ)
Unmethylated and methylated signal intensities in Series supplementary file
|
| |
|
| Submission date |
Jul 01, 2015 |
| Last update date |
Mar 25, 2019 |
| Contact name |
Alexandra Binder |
| Organization name |
University of California Los Angeles
|
| Department |
Department of Epidemiology
|
| Street address |
650 Charles Young Drive, South
|
| City |
Los Angeles |
| State/province |
California |
| ZIP/Postal code |
90095 |
| Country |
USA |
| |
|
| Platform ID |
GPL13534 |
| Series (2) |
| GSE70453 |
Epigenome-wide and Transcriptome-wide Analyses Reveal Gestational Diabetes is Associated with Alterations in the Human Leukocyte Antigen Complex [methylation] |
| GSE70494 |
Epigenome-wide and Transcriptome-wide Analyses Reveal Gestational Diabetes is Associated with Alterations in the Human Leukocyte Antigen Complex |
|
| Relations |
| Reanalyzed by |
GSE128827 |
