|
Status |
Public on Nov 17, 2015 |
Title |
Young SAMP8 control 4 |
Sample type |
SRA |
|
|
Source name |
Brain hippocampus
|
Organism |
Mus musculus |
Characteristics |
strain: SAMP8/TaHsd tissue: Brain age: three months old treatment: control
|
Treatment protocol |
Mice were fed control diet and diet containing J147
|
Growth protocol |
All experiments were performed in accordance with the US Public Health Service Guide for Care and Use of Laboratory Animals and protocols approved by the IACUC at the Salk Institute.
|
Extracted molecule |
polyA RNA |
Extraction protocol |
RNA was isolated using the RNeasy Plus Universal mini kit (Qiagen) Illumina TruSeq Stranded mRNA
|
|
|
Library strategy |
RNA-Seq |
Library source |
transcriptomic |
Library selection |
cDNA |
Instrument model |
Illumina HiSeq 2500 |
|
|
Data processing |
alignment with STAR 2.3.0e gene-level read counts with featureCounts 1.4.6 (Subread package) Genome_build: mm9 Supplementary_files_format_and_content: per-gene raw read count (CSV)
|
|
|
Submission date |
May 26, 2015 |
Last update date |
May 15, 2019 |
Contact name |
Max Chang |
E-mail(s) |
mchang@ucsd.edu
|
Organization name |
University of California, San Diego
|
Street address |
9500 Gilman Drive
|
City |
La Jolla |
State/province |
CA |
ZIP/Postal code |
92093 |
Country |
USA |
|
|
Platform ID |
GPL17021 |
Series (1) |
GSE69244 |
Whole transcriptome analysis of brain hippocampal tissue from young and old senescence-accelerated prone SAMP8 mice treated with control diet and J147-containing diet |
|
Relations |
BioSample |
SAMN03734792 |
SRA |
SRX1038774 |