|
Status |
Public on May 14, 2015 |
Title |
380-Symptomatic |
Sample type |
genomic |
|
|
Source name |
Carotid samples obtained by endarterctomy
|
Organism |
Homo sapiens |
Characteristics |
type: Symptomatic tissue: carotid plaque
|
Extracted molecule |
genomic DNA |
Extraction protocol |
Total DNA was isolated by standard procedures
|
Label |
Cy3, Cy5
|
Label protocol |
Standard Illumina labelling protocol
|
|
|
Hybridization protocol |
bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
|
Scan protocol |
Arrays were imaged using High Scan SQ using standard recommended Illumina scanner setting
|
Data processing |
Genome Studio V2011.2 ; Average Beta. The unmethylated (Signal_B) and methylated (Signal_A) signal intensities are included with the average beta values and detection p-values in the file ResultsMatrix.txt available on the series record.
|
|
|
Submission date |
Mar 04, 2015 |
Last update date |
May 14, 2015 |
Contact name |
Sebastian Moran |
Organization name |
IDIBELL
|
Department |
PEBC
|
Street address |
Av. Gran Via de l'Hospitalet, 199-203
|
City |
L'Hospitalet del Llobregat |
State/province |
Barcelona |
ZIP/Postal code |
08908 |
Country |
Spain |
|
|
Platform ID |
GPL13534 |
Series (1) |
GSE66500 |
DNA methylation dynamics in human carotid plaques after cerebrovascular events |
|