|
| Status |
Public on May 14, 2015 |
| Title |
146-Symptomatic |
| Sample type |
genomic |
| |
|
| Source name |
Carotid samples obtained by endarterctomy
|
| Organism |
Homo sapiens |
| Characteristics |
type: Symptomatic
tissue: carotid plaque
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
Total DNA was isolated by standard procedures
|
| Label |
Cy3, Cy5
|
| Label protocol |
Standard Illumina labelling protocol
|
| |
|
| Hybridization protocol |
bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
|
| Scan protocol |
Arrays were imaged using High Scan SQ using standard recommended Illumina scanner setting
|
| Data processing |
Genome Studio V2011.2 ; Average Beta. The unmethylated (Signal_B) and methylated (Signal_A) signal intensities are included with the average beta values and detection p-values in the file ResultsMatrix.txt available on the series record.
|
| |
|
| Submission date |
Mar 04, 2015 |
| Last update date |
May 14, 2015 |
| Contact name |
Sebastian Moran |
| Organization name |
IDIBELL
|
| Department |
PEBC
|
| Street address |
Av. Gran Via de l'Hospitalet, 199-203
|
| City |
L'Hospitalet del Llobregat |
| State/province |
Barcelona |
| ZIP/Postal code |
08908 |
| Country |
Spain |
| |
|
| Platform ID |
GPL13534 |
| Series (1) |
| GSE66500 |
DNA methylation dynamics in human carotid plaques after cerebrovascular events |
|
