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Sample GSM1619648 Query DataSets for GSM1619648
Status Public on Jun 01, 2015
Title DCIS_sample39
Sample type genomic
 
Source name DCIS
Organism Homo sapiens
Characteristics gender: Female
tissue: DCIS
future development of invasive breast cancer: No IDC Diagnosis
subject age: 70
Extracted molecule genomic DNA
Extraction protocol DNA was isolated using the QIAamp DNA formalin-fixed paraffin embedded tissue kit
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
 
Hybridization protocol bisulfite converted DNA was processed with the Illumina FFPE restoration kit, amplified, fragmented and hybridized to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing ChAMP, Morris et al Bioinformatics 2013
 
Submission date Feb 25, 2015
Last update date Jun 01, 2015
Contact name Kevin Crowley Johnson
E-mail(s) Kevin.c.johnson.gr@dartmouth.edu
Organization name Geisel School of Medicine at Dartmouth College
Department Epidemiology
Lab Christensen Lab
Street address 72 College Street
City Hanover
State/province NH
ZIP/Postal code 03755
Country USA
 
Platform ID GPL13534
Series (1)
GSE66313 DNA methylation in ductal carcinoma in situ related with future development of invasive breast cancer

Data table header descriptions
ID_REF
VALUE Average Beta-value

Data table
ID_REF VALUE
cg00000029
cg00000108 0.951789161
cg00000109
cg00000165
cg00000236 0.869622508
cg00000289
cg00000292 0.501970401
cg00000321 0.16585651
cg00000363 0.12436076
cg00000622 0.034967501
cg00000658 0.869852864
cg00000714 0.054804413
cg00000721
cg00000734 0.036146787
cg00000769 0.047280788
cg00000807 0.948864275
cg00000884 0.889718722
cg00000905 0.051955786
cg00000924 0.312717892
cg00000948 0.97163417

Total number of rows: 485577

Table truncated, full table size 9929 Kbytes.




Supplementary file Size Download File type/resource
GSM1619648_9343114172_R04C01_Grn.idat.gz 3.9 Mb (ftp)(http) IDAT
GSM1619648_9343114172_R04C01_Red.idat.gz 4.1 Mb (ftp)(http) IDAT
Processed data included within Sample table

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