|
| Status |
Public on Jun 01, 2015 |
| Title |
DCIS_sample26 |
| Sample type |
genomic |
| |
|
| Source name |
DCIS
|
| Organism |
Homo sapiens |
| Characteristics |
gender: Female
tissue: DCIS
future development of invasive breast cancer: IDC Diagnosis
subject age: 70
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
DNA was isolated using the QIAamp DNA formalin-fixed paraffin embedded tissue kit
|
| Label |
Cy5 and Cy3
|
| Label protocol |
Standard Illumina Protocol
|
| |
|
| Hybridization protocol |
bisulfite converted DNA was processed with the Illumina FFPE restoration kit, amplified, fragmented and hybridized to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
|
| Scan protocol |
Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
|
| Data processing |
ChAMP, Morris et al Bioinformatics 2013
|
| |
|
| Submission date |
Feb 25, 2015 |
| Last update date |
Jun 01, 2015 |
| Contact name |
Kevin Crowley Johnson |
| E-mail(s) |
Kevin.c.johnson.gr@dartmouth.edu
|
| Organization name |
Geisel School of Medicine at Dartmouth College
|
| Department |
Epidemiology
|
| Lab |
Christensen Lab
|
| Street address |
72 College Street
|
| City |
Hanover |
| State/province |
NH |
| ZIP/Postal code |
03755 |
| Country |
USA |
| |
|
| Platform ID |
GPL13534 |
| Series (1) |
| GSE66313 |
DNA methylation in ductal carcinoma in situ related with future development of invasive breast cancer |
|
