|
Status |
Public on Jun 01, 2015 |
Title |
Adjacent-Normal_sample20 |
Sample type |
genomic |
|
|
Source name |
Adjacent-Normal
|
Organism |
Homo sapiens |
Characteristics |
gender: Female tissue: Adjacent-Normal future development of invasive breast cancer: NA subject age: 49
|
Extracted molecule |
genomic DNA |
Extraction protocol |
DNA was isolated using the QIAamp DNA formalin-fixed paraffin embedded tissue kit
|
Label |
Cy5 and Cy3
|
Label protocol |
Standard Illumina Protocol
|
|
|
Hybridization protocol |
bisulfite converted DNA was processed with the Illumina FFPE restoration kit, amplified, fragmented and hybridized to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
|
Scan protocol |
Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
|
Data processing |
ChAMP, Morris et al Bioinformatics 2013
|
|
|
Submission date |
Feb 25, 2015 |
Last update date |
Jun 01, 2015 |
Contact name |
Kevin Crowley Johnson |
E-mail(s) |
Kevin.c.johnson.gr@dartmouth.edu
|
Organization name |
Geisel School of Medicine at Dartmouth College
|
Department |
Epidemiology
|
Lab |
Christensen Lab
|
Street address |
72 College Street
|
City |
Hanover |
State/province |
NH |
ZIP/Postal code |
03755 |
Country |
USA |
|
|
Platform ID |
GPL13534 |
Series (1) |
GSE66313 |
DNA methylation in ductal carcinoma in situ related with future development of invasive breast cancer |
|