tissue: ear notch breed: Landrace Sex: male fertility: high
Extracted molecule
genomic DNA
Extraction protocol
Genomic DNA was extracted using a standard Proteinase K and phenol/chlorophorm method.
Label
biotin
Label protocol
The protocol followed the manufacturers recommendations by the service provider DNA Landmarks, Quebec, Canada
Hybridization protocol
The protocol followed the manufacturers recommendations by the service provider DNA Landmarks, Quebec, Canada
Scan protocol
The protocol followed the manufacturers recommendations by the service provider DNA Landmarks, Quebec, Canada
Data processing
This work analysed DNA copy number variations only. The starting points were the GenomeStudio project files (.bsc) provided by DNAL Landmarks. The LogR data was exported from GenomeStudio using the GoldenHelix SVS exporter. Copy number analysis was done in SNP and Variation Suite ver. 7.7.8. (SVS, GoldenHelix Inc.)