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Sample GSM1602319 Query DataSets for GSM1602319
Status Public on Dec 08, 2015
Title blood_twin2_2
Sample type genomic
 
Source name blood_twin2
Organism Homo sapiens
Characteristics pair id number: 2
age: 30
ethnicity: Chinese
gender: female
tissue: blood
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was extracted from blood samples by QIAamp DNA Blood Midi kit (QIAGEN), according to the manufacturer’s protocol.
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
 
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium HumanMethylation450 BeadChip using standard Illumina protoco
Scan protocol Arrays were imaged using iScan Reader using standard recommended Illumina scanner setting
Description D6; genomic DNA isolated from a blood of a female who is the second one of twin pair 2 from Chinese Han
Data processing BeadStudio software
The non_normalized data matrix contains unmethylated and methylated signal intensities.
 
Submission date Feb 04, 2015
Last update date Dec 08, 2015
Contact name Bingbing Xie
E-mail(s) x1ben1@126.com
Phone 13121220228
Organization name Beijing Istitute of Genomics
Street address Beicheng west road
City Beijing
ZIP/Postal code 100000
Country China
 
Platform ID GPL13534
Series (1)
GSE65638 Epigenome analysis of female identical twins

Data table header descriptions
ID_REF
VALUE Average Beta
Detection Pval

Data table
ID_REF VALUE Detection Pval
cg00000029 0.5359958 0.00
cg00000108 0.9456366 0.00
cg00000109 0.8062598 0.00
cg00000165 0.1947017 0.00
cg00000236 0.7514569 0.00
cg00000289 0.6855417 0.00
cg00000292 0.8151544 0.00
cg00000321 0.3033234 0.00
cg00000363 0.3744516 0.00
cg00000622 0.009265899 0.00
cg00000658 0.8232074 0.00
cg00000714 0.2168999 0.00
cg00000721 0.9454659 0.00
cg00000734 0.09350263 0.00
cg00000769 0.06620908 0.00
cg00000807 0.8279879 0.00
cg00000884 0.8506966 0.00
cg00000905 0.07511781 0.00
cg00000924 0.5392589 0.00
cg00000948 0.8661869 0.00

Total number of rows: 485577

Table truncated, full table size 12412 Kbytes.




Supplementary file Size Download File type/resource
GSM1602319_D6_7970376047_R06C01_Grn.idat.gz 4.1 Mb (ftp)(http) IDAT
GSM1602319_D6_7970376047_R06C01_Red.idat.gz 4.1 Mb (ftp)(http) IDAT
Processed data included within Sample table

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