NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM1589551 Query DataSets for GSM1589551
Status Public on Nov 01, 2015
Title 15-07-030-2 [expression]
Sample type RNA
 
Source name nasal-epithelium
Organism Homo sapiens
Characteristics asthma: FALSE
lnige: 3.3673
gender: Female
age: 11
race_hispanic: Yes
race_aa: No
race_white: No
race_asian: No
race_indian_alaska: No
site: New York
Extracted molecule total RNA
Extraction protocol AllPrep kit (Qiagen)
Label cy3
Label protocol Low Input Quick Amp (Agilent)
 
Hybridization protocol Agilent version 6.6
Scan protocol Agilent GE1_1105_Oct12
Data processing limma was used to backgroundCorrect(method=”normexp”, offset=8) → normalizeBetweenArrays(method=”quantile”) → keep only probes where half of the samples had a 10% higher signal than the 95th pctile of the control probes
 
Submission date Jan 22, 2015
Last update date Nov 01, 2015
Contact name David Schwartz
E-mail(s) DAVID.SCHWARTZ@ucdenver.edu
Phone 303-724-1783
Organization name University of Colorado, Anschutz Medical Campus
Department Medicine
Street address Anschutz Medical Campus
City Aurora
State/province CO
ZIP/Postal code 80045
Country USA
 
Platform ID GPL14550
Series (2)
GSE65204 The Nasal Gene Expression and Childhood Atopic Asthma
GSE65205 Childhood Atopic Asthma

Data table header descriptions
ID_REF
VALUE log2 normalized value

Data table
ID_REF VALUE
A_23_P326296 5.54
A_24_P287941 4.65
A_24_P325046 4.34
A_23_P200404 8
A_19_P00800513 5.72
A_32_P98683 8.14
A_23_P137543 6.98
A_19_P00803040 4.34
A_23_P117852 6.49
A_24_P328231 5.47
A_24_P186124 6.56
A_23_P369983 8.09
A_23_P325676 5.52
A_24_P37441 5.28
A_23_P20980 8.55
A_23_P123265 6.32
A_23_P339687 5.91
A_23_P252981 6.01
A_23_P200829 7.45
A_23_P105144 4.53

Total number of rows: 20533

Table truncated, full table size 364 Kbytes.




Supplementary file Size Download File type/resource
GSM1589551_252800419830_2013-08-06_10-16_532_GE1_1105_Oct12_2_3.txt.gz 3.1 Mb (ftp)(http) TXT
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap