asthma: TRUE lnige: 7.5642 gender: Female age: 11 race_hispanic: No race_aa: Yes race_white: No race_asian: No race_indian_alaska: No site: Boston
Extracted molecule
total RNA
Extraction protocol
AllPrep kit (Qiagen)
Label
cy3
Label protocol
Low Input Quick Amp (Agilent)
Hybridization protocol
Agilent version 6.6
Scan protocol
Agilent GE1_1105_Oct12
Data processing
limma was used to backgroundCorrect(method=”normexp”, offset=8) → normalizeBetweenArrays(method=”quantile”) → keep only probes where half of the samples had a 10% higher signal than the 95th pctile of the control probes
