|
| Status |
Public on May 28, 2015 |
| Title |
genomic DNA from whole blood of subject Sample78 |
| Sample type |
genomic |
| |
|
| Source name |
Whole Blood
|
| Organism |
Homo sapiens |
| Characteristics |
tissue: whole blood
Sex: female
age: 5.8
dna methylation age: 7.430588047
age acceleration vs controls: 1.097974483
age acceleration vs controls in children: 1.822111298
cor sample vs gold standard: 0.970532471
disease status: Syndrome X
family number: 1
relation to proband: proband
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
genomic DNA was extracted and purified from EDTA tubes using the RecoverEase DNA Isolation Kit.
|
| Label |
Cy3 and Cy5
|
| Label protocol |
Standard Illumina Protocol
|
| |
|
| Hybridization protocol |
bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
|
| Scan protocol |
Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
|
| Data processing |
BeadStudio software v3.2.
Unmethylated and methylated signal intensities and detection p values in Series supplementary file
|
| |
|
| Submission date |
Dec 23, 2014 |
| Last update date |
May 28, 2015 |
| Contact name |
Steve Horvath |
| E-mail(s) |
shorvath@altoslabs.com
|
| Organization name |
University of California, Los Angeles
|
| Department |
Human Genetics
|
| Lab |
Horvath
|
| Street address |
695 Charles E. Young Drive South, Box 708822
|
| City |
Los Angeles |
| State/province |
CA |
| ZIP/Postal code |
90095-7088 |
| Country |
USA |
| |
|
| Platform ID |
GPL13534 |
| Series (1) |
| GSE64495 |
DNA methylation profiles of human blood samples from a severe developmental disorder and controls |
|
