|
| Status |
Public on Jan 04, 2016 |
| Title |
SU008 LSC 3 |
| Sample type |
RNA |
| |
|
| Source name |
Bone marrow of AML patient
|
| Organism |
Homo sapiens |
| Characteristics |
surface markers: CD34+CD38-
cell type: Leukemic stem cell (LSC)
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Total RNA was extracted according to the manufacturer's protocol
|
| Label |
biotin
|
| Label protocol |
Standard Affymetrix IVT labeling protocol
|
| |
|
| Hybridization protocol |
Performed according to manufacturer's instructions
|
| Scan protocol |
Scanning was done using an Affymetrix Gene Chip 3000 scanner, and processed into CEL files using Affymetrix GCOS software
|
| Description |
Leukemic stem cell (LSC)
|
| Data processing |
Raw CEL data were normalized in R/bioconductor using MAS5 with custom CDF (brainarray) version 16.0 of ENTREZG
|
| |
|
| Submission date |
Nov 13, 2014 |
| Last update date |
Nov 14, 2018 |
| Contact name |
Andrew Gentles |
| Organization name |
Stanford University
|
| Street address |
1201 Welch Road
|
| City |
Stanford |
| State/province |
CA |
| ZIP/Postal code |
94305 |
| Country |
USA |
| |
|
| Platform ID |
GPL17810 |
| Series (1) |
| GSE63270 |
Expression profiles of normal hematopoietic stem and progenitor cells and acute myeloid leukemia sub-populations |
|
| Relations |
| Reanalyzed by |
GSE122511 |
