|
Status |
Public on Oct 05, 2015 |
Title |
t5.miR.14 |
Sample type |
RNA |
|
|
Source name |
Hippocampal brain_MS5
|
Organism |
Mus musculus |
Characteristics |
strain: C57BL/6 gender: male age: postnatal day 9 (P9) tissue: Hippocampal brain treated with: 5 mg/kg morphine + stress (MS5)
|
Biomaterial provider |
The University of Washington (Seattle, WA).
|
Extracted molecule |
total RNA |
Extraction protocol |
RNA extraction was performed by the CHDD Genomics Core Laboratory followed by the manufacturer’s protocols using the GeneChip platform by Affymetrix.
|
Label |
biotin
|
Label protocol |
For microarray hybridization, RNA was processed for hybridization to Affymetrix microRNA 2.0 Arrays through a core facility in the CHDD Genomics Core Laboratory at the University of Washington according to the manufacturer's instructions.
|
|
|
Hybridization protocol |
The standard hybridization protocol was used as recommended by Affymterix.
|
Scan protocol |
GeneChips were scanned using the Affymetrix GeneArray Scanner 3000 through the University of Washington Functional Genomics Laboratory CHDD Genomics Core Laboratory.
|
Description |
Hippocampal brain
|
Data processing |
Bioconductor software, RMA normalization log2
|
|
|
Submission date |
Oct 15, 2014 |
Last update date |
Sep 05, 2017 |
Contact name |
James William MacDonald |
E-mail(s) |
jmacdon@uw.edu
|
Organization name |
University of Washington
|
Department |
Environmental and Occupational Health Sciences
|
Street address |
4225 Roosevelt Way NE
|
City |
Seattle |
State/province |
WA |
ZIP/Postal code |
98105-6099 |
Country |
USA |
|
|
Platform ID |
GPL14613 |
Series (1) |
GSE62346 |
Neonatal morphine exposure alters mRNA and microRNA (miR) expression in mouse hippocampus |
|