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GEO accession:
Sample GSM1518240
Query DataSets for GSM1518240
Status
Public on Feb 28, 2015
Title
69595.2
Sample type
genomic
Source name
pre-symptomatic_AD_TP2
Organism
Homo sapiens
Characteristics
tissue: Whole blood
Sex: Male
age: 74
Extracted molecule
genomic DNA
Extraction protocol
Phenol chloroform DNA extraction
Label
Cy3 and Cy5
Label protocol
Illumina Infinium protocol
Hybridization protocol
Illumina Infinium protocol
Scan protocol
Illumina Infinium protocol scanned using Illumina HiScan System
Data processing
Data loaded into R using methylumi
Beta, methylated and unmethylated signal and wateRmelon normalised betas are available on the series record.
Submission date
Oct 02, 2014
Last update date
Feb 28, 2015
Contact name
Rebecca Georgina Smith
E-mail(s)
r.g.smith@exeter.ac.uk
Organization name
University of Exeter
Department
Medical School
Street address
RILD, RD and E
City
Exeter
State/province
Devon
ZIP/Postal code
EX2 5DW
Country
United Kingdom
Platform ID
GPL13534
Series (1)
GSE62003
Blood methylomic signatures of pre-symptomatic dementia in elderly subjects with Type 2 Diabetes Mellitus
Data table header descriptions
ID_REF
VALUE
wateRmelon normalized beta
Data table
ID_REF
VALUE
cg00000029
0.510119226
cg00000108
0.900936244
cg00000109
0.798848077
cg00000165
0.235840035
cg00000236
0.727012285
cg00000289
0.476816972
cg00000292
0.817436108
cg00000321
0.330691736
cg00000363
0.366201682
cg00000622
0.051215319
cg00000658
0.787119672
cg00000714
0.206472656
cg00000721
0.861879958
cg00000734
0.118352761
cg00000769
0.087396183
cg00000807
0.783213491
cg00000884
0.787559007
cg00000905
0.164748737
cg00000924
0.531764278
cg00000948
0.800298718
Total number of rows:
485577
Table truncated, full table size
10864 Kbytes
.
Supplementary data files not provided
Processed data included within Sample table
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