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GEO accession:
Sample GSM1518239
Query DataSets for GSM1518239
Status
Public on Feb 28, 2015
Title
69595.1
Sample type
genomic
Source name
pre-symptomatic_AD_TP1
Organism
Homo sapiens
Characteristics
tissue: Whole blood
Sex: Male
age: 74
Extracted molecule
genomic DNA
Extraction protocol
Phenol chloroform DNA extraction
Label
Cy3 and Cy5
Label protocol
Illumina Infinium protocol
Hybridization protocol
Illumina Infinium protocol
Scan protocol
Illumina Infinium protocol scanned using Illumina HiScan System
Data processing
Data loaded into R using methylumi
Beta, methylated and unmethylated signal and wateRmelon normalised betas are available on the series record.
Submission date
Oct 02, 2014
Last update date
Feb 28, 2015
Contact name
Rebecca Georgina Smith
E-mail(s)
r.g.smith@exeter.ac.uk
Organization name
University of Exeter
Department
Medical School
Street address
RILD, RD and E
City
Exeter
State/province
Devon
ZIP/Postal code
EX2 5DW
Country
United Kingdom
Platform ID
GPL13534
Series (1)
GSE62003
Blood methylomic signatures of pre-symptomatic dementia in elderly subjects with Type 2 Diabetes Mellitus
Data table header descriptions
ID_REF
VALUE
wateRmelon normalized beta
Data table
ID_REF
VALUE
cg00000029
0.498173068
cg00000108
0.89604476
cg00000109
0.800950051
cg00000165
0.262208247
cg00000236
0.733130517
cg00000289
0.561518256
cg00000292
0.823081084
cg00000321
0.328527072
cg00000363
0.368632166
cg00000622
0.05489016
cg00000658
0.781854341
cg00000714
0.199519852
cg00000721
0.854742197
cg00000734
0.111156582
cg00000769
0.100169764
cg00000807
0.773849454
cg00000884
0.807495471
cg00000905
0.157504308
cg00000924
0.552452689
cg00000948
0.842899923
Total number of rows:
485577
Table truncated, full table size
10865 Kbytes
.
Supplementary data files not provided
Processed data included within Sample table
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