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GEO accession:
Sample GSM1518235
Query DataSets for GSM1518235
Status
Public on Feb 28, 2015
Title
91507.1
Sample type
genomic
Source name
pre-symptomatic_AD_TP1
Organism
Homo sapiens
Characteristics
tissue: Whole blood
Sex: Female
age: 73
Extracted molecule
genomic DNA
Extraction protocol
Phenol chloroform DNA extraction
Label
Cy3 and Cy5
Label protocol
Illumina Infinium protocol
Hybridization protocol
Illumina Infinium protocol
Scan protocol
Illumina Infinium protocol scanned using Illumina HiScan System
Data processing
Data loaded into R using methylumi
Beta, methylated and unmethylated signal and wateRmelon normalised betas are available on the series record.
Submission date
Oct 02, 2014
Last update date
Feb 28, 2015
Contact name
Rebecca Georgina Smith
E-mail(s)
r.g.smith@exeter.ac.uk
Organization name
University of Exeter
Department
Medical School
Street address
RILD, RD and E
City
Exeter
State/province
Devon
ZIP/Postal code
EX2 5DW
Country
United Kingdom
Platform ID
GPL13534
Series (1)
GSE62003
Blood methylomic signatures of pre-symptomatic dementia in elderly subjects with Type 2 Diabetes Mellitus
Data table header descriptions
ID_REF
VALUE
wateRmelon normalized beta
Data table
ID_REF
VALUE
cg00000029
0.54970228
cg00000108
0.901439435
cg00000109
0.828779622
cg00000165
0.2663342
cg00000236
0.772943763
cg00000289
0.601306526
cg00000292
0.819582729
cg00000321
0.381953358
cg00000363
0.399192555
cg00000622
0.055325448
cg00000658
0.811577436
cg00000714
0.23771756
cg00000721
0.860009115
cg00000734
0.119917163
cg00000769
0.074713033
cg00000807
0.716273239
cg00000884
0.792620362
cg00000905
0.178067497
cg00000924
0.513440165
cg00000948
0.832755821
Total number of rows:
485577
Table truncated, full table size
10865 Kbytes
.
Supplementary data files not provided
Processed data included within Sample table
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