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GEO accession:
Sample GSM1518215
Query DataSets for GSM1518215
Status
Public on Feb 28, 2015
Title
63904.1
Sample type
genomic
Source name
pre-symptomatic_AD_TP1
Organism
Homo sapiens
Characteristics
tissue: Whole blood
Sex: Female
age: 76
Extracted molecule
genomic DNA
Extraction protocol
Phenol chloroform DNA extraction
Label
Cy3 and Cy5
Label protocol
Illumina Infinium protocol
Hybridization protocol
Illumina Infinium protocol
Scan protocol
Illumina Infinium protocol scanned using Illumina HiScan System
Data processing
Data loaded into R using methylumi
Beta, methylated and unmethylated signal and wateRmelon normalised betas are available on the series record.
Submission date
Oct 02, 2014
Last update date
Feb 28, 2015
Contact name
Rebecca Georgina Smith
E-mail(s)
r.g.smith@exeter.ac.uk
Organization name
University of Exeter
Department
Medical School
Street address
RILD, RD and E
City
Exeter
State/province
Devon
ZIP/Postal code
EX2 5DW
Country
United Kingdom
Platform ID
GPL13534
Series (1)
GSE62003
Blood methylomic signatures of pre-symptomatic dementia in elderly subjects with Type 2 Diabetes Mellitus
Data table header descriptions
ID_REF
VALUE
wateRmelon normalized beta
Data table
ID_REF
VALUE
cg00000029
0.547325079
cg00000108
0.909873373
cg00000109
0.808068554
cg00000165
0.256661968
cg00000236
0.775870641
cg00000289
0.638667819
cg00000292
0.844347254
cg00000321
0.372553265
cg00000363
0.434205168
cg00000622
0.054554415
cg00000658
0.790886032
cg00000714
0.220305812
cg00000721
0.867042641
cg00000734
0.106802704
cg00000769
0.095941021
cg00000807
0.757049624
cg00000884
0.785826954
cg00000905
0.161631935
cg00000924
0.572477985
cg00000948
0.843675831
Total number of rows:
485577
Table truncated, full table size
10865 Kbytes
.
Supplementary data files not provided
Processed data included within Sample table
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