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GEO accession:
Sample GSM1518200
Query DataSets for GSM1518200
Status
Public on Feb 28, 2015
Title
32093.1
Sample type
genomic
Source name
pre-symptomatic_AD_TP1
Organism
Homo sapiens
Characteristics
tissue: Whole blood
Sex: Male
age: 72
Extracted molecule
genomic DNA
Extraction protocol
Phenol chloroform DNA extraction
Label
Cy3 and Cy5
Label protocol
Illumina Infinium protocol
Hybridization protocol
Illumina Infinium protocol
Scan protocol
Illumina Infinium protocol scanned using Illumina HiScan System
Data processing
Data loaded into R using methylumi
Beta, methylated and unmethylated signal and wateRmelon normalised betas are available on the series record.
Submission date
Oct 02, 2014
Last update date
Feb 28, 2015
Contact name
Rebecca Georgina Smith
E-mail(s)
r.g.smith@exeter.ac.uk
Organization name
University of Exeter
Department
Medical School
Street address
RILD, RD and E
City
Exeter
State/province
Devon
ZIP/Postal code
EX2 5DW
Country
United Kingdom
Platform ID
GPL13534
Series (1)
GSE62003
Blood methylomic signatures of pre-symptomatic dementia in elderly subjects with Type 2 Diabetes Mellitus
Data table header descriptions
ID_REF
VALUE
wateRmelon normalized beta
Data table
ID_REF
VALUE
cg00000029
0.553602709
cg00000108
0.914029192
cg00000109
0.81248615
cg00000165
0.237130864
cg00000236
0.75959164
cg00000289
0.569384187
cg00000292
0.818371423
cg00000321
0.421508356
cg00000363
0.401114032
cg00000622
0.049972356
cg00000658
0.764386633
cg00000714
0.187976276
cg00000721
0.870318853
cg00000734
0.114910583
cg00000769
0.125119817
cg00000807
0.767334947
cg00000884
0.799409786
cg00000905
0.14647896
cg00000924
0.520315046
cg00000948
0.847668787
Total number of rows:
485577
Table truncated, full table size
10864 Kbytes
.
Supplementary data files not provided
Processed data included within Sample table
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