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GEO accession:
Sample GSM1518189
Query DataSets for GSM1518189
Status
Public on Feb 28, 2015
Title
10918.2
Sample type
genomic
Source name
pre-symptomatic_AD_TP2
Organism
Homo sapiens
Characteristics
tissue: Whole blood
Sex: Male
age: 69
Extracted molecule
genomic DNA
Extraction protocol
Phenol chloroform DNA extraction
Label
Cy3 and Cy5
Label protocol
Illumina Infinium protocol
Hybridization protocol
Illumina Infinium protocol
Scan protocol
Illumina Infinium protocol scanned using Illumina HiScan System
Data processing
Data loaded into R using methylumi
Beta, methylated and unmethylated signal and wateRmelon normalised betas are available on the series record.
Submission date
Oct 02, 2014
Last update date
Feb 28, 2015
Contact name
Rebecca Georgina Smith
E-mail(s)
r.g.smith@exeter.ac.uk
Organization name
University of Exeter
Department
Medical School
Street address
RILD, RD and E
City
Exeter
State/province
Devon
ZIP/Postal code
EX2 5DW
Country
United Kingdom
Platform ID
GPL13534
Series (1)
GSE62003
Blood methylomic signatures of pre-symptomatic dementia in elderly subjects with Type 2 Diabetes Mellitus
Data table header descriptions
ID_REF
VALUE
wateRmelon normalized beta
Data table
ID_REF
VALUE
cg00000029
0.568682823
cg00000108
0.897381164
cg00000109
0.778513713
cg00000165
0.280803999
cg00000236
0.746835202
cg00000289
0.51575513
cg00000292
0.788225493
cg00000321
0.399522785
cg00000363
0.367814695
cg00000622
0.066607005
cg00000658
0.788413056
cg00000714
0.239017739
cg00000721
0.870520537
cg00000734
0.126864274
cg00000769
0.09894091
cg00000807
0.75035901
cg00000884
0.808092745
cg00000905
0.193526765
cg00000924
0.535220788
cg00000948
0.822072642
Total number of rows:
485577
Table truncated, full table size
10865 Kbytes
.
Supplementary data files not provided
Processed data included within Sample table
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