|
Status |
Public on Oct 26, 2015 |
Title |
genomic DNA from 2014ccRCC04T |
Sample type |
genomic |
|
|
Source name |
2014ccRCC04Tumor
|
Organism |
Homo sapiens |
Characteristics |
tissue: kidney gender: female sample type: Tumor disease state: ccRCC
|
Extracted molecule |
genomic DNA |
Extraction protocol |
DNA was extracted using QIAmp DNA mini kit 50 (Qiagen) according to manufacturer's instructions
|
Label |
Cy5 and Cy3
|
Label protocol |
Standard Illumina Protocol
|
|
|
Hybridization protocol |
Bisulphite converted DNA was amplified, fragmented and hybrdised to Illumina Infinium HumanMethyaltion450 bead chip using standard Illumina protocol
|
Scan protocol |
Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
|
Description |
2014ccRCC04Tumor
|
Data processing |
RnBeads version 0.99.12 packages in R software 3.02; Raw data is available on sample records in the idat files and on the series record in the file Unmethylated_and_methylated_signal_intensities.csv.
|
|
|
Submission date |
Sep 15, 2014 |
Last update date |
Oct 26, 2015 |
Contact name |
jinhuan wei |
E-mail(s) |
weijh23@mail.sysu.edu.cn
|
Organization name |
SYSU
|
Street address |
No.58 zhongshan 2rd Road
|
City |
Guangzhou |
ZIP/Postal code |
510080 |
Country |
China |
|
|
Platform ID |
GPL13534 |
Series (1) |
GSE61441 |
Epigenome analysis of clear cell renal cell carcinoma (ccRCC) tissue versus matched normal kidney tissue |
|