|
| Status |
Public on Oct 26, 2015 |
| Title |
genomic DNA from 2014ccRCC01N |
| Sample type |
genomic |
| |
|
| Source name |
2014ccRCC01Normal
|
| Organism |
Homo sapiens |
| Characteristics |
tissue: kidney
gender: male
sample type: Normal
disease state: ccRCC
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
DNA was extracted using QIAmp DNA mini kit 50 (Qiagen) according to manufacturer's instructions
|
| Label |
Cy5 and Cy3
|
| Label protocol |
Standard Illumina Protocol
|
| |
|
| Hybridization protocol |
Bisulphite converted DNA was amplified, fragmented and hybrdised to Illumina Infinium HumanMethyaltion450 bead chip using standard Illumina protocol
|
| Scan protocol |
Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
|
| Description |
2014ccRCC01Normal
|
| Data processing |
RnBeads version 0.99.12 packages in R software 3.02; Raw data is available on sample records in the idat files and on the series record in the file Unmethylated_and_methylated_signal_intensities.csv.
|
| |
|
| Submission date |
Sep 15, 2014 |
| Last update date |
Oct 26, 2015 |
| Contact name |
jinhuan wei |
| E-mail(s) |
weijh23@mail.sysu.edu.cn
|
| Organization name |
SYSU
|
| Street address |
No.58 zhongshan 2rd Road
|
| City |
Guangzhou |
| ZIP/Postal code |
510080 |
| Country |
China |
| |
|
| Platform ID |
GPL13534 |
| Series (1) |
| GSE61441 |
Epigenome analysis of clear cell renal cell carcinoma (ccRCC) tissue versus matched normal kidney tissue |
|
