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Sample GSM1500872 Query DataSets for GSM1500872
Status Public on Nov 03, 2014
Title genomic DNA from human adipose of subject S11a14992
Sample type genomic
 
Source name Adipose
Organism Homo sapiens
Characteristics subjectid: S11a14992
Sex: female
dna.extraction.method: AllPrep
age: 46
dnamage: 55.59161204
ageaccelerationresidual: 2.29891367862082
bmi: 36.9
diseasestatus: NAFLD
nafldactivityscore: 2
liversteatosis: 2
liverinflammation: 0
fibrosis: 0
Treatment protocol Standard Illumina Protocol
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol For homogenisation of five to ten milligram frozen tissue and subsequent nucleic acid isolation, tubes with 1.4 mm ceramic beads (Precellys, Villeurbanne, France) and the AllPrep DNA/RNA Mini Kit (QIAGEN, Hilden, Germany) were used.
Label Cy3, Cy5
Label protocol Standard Illumina Protocol
 
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description genomic DNA from human adipose tissue
Data processing BeadStudio software v3.2.
 
Submission date Sep 09, 2014
Last update date Nov 03, 2014
Contact name Steve Horvath
E-mail(s) shorvath@altoslabs.com
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
 
Platform ID GPL13534
Series (2)
GSE61256 Obesity accelerates epigenetic aging of human liver
GSE61257 Human adipose Illumina Inf 450 DNA methylation data

Data table header descriptions
ID_REF
VALUE Average Beta (no special processing)

Data table
ID_REF VALUE
cg00000029 0.3001368
cg00000108 0.8583722
cg00000109 0.7280235
cg00000165 0.1342499
cg00000236 0.6601602
cg00000289 0.6027328
cg00000292 0.6017516
cg00000321 0.2481596
cg00000363 0.2870585
cg00000622 0.02143008
cg00000658 0.7744337
cg00000714 0.1090503
cg00000721 0.8488602
cg00000734 0.07214615
cg00000769 0.04261665
cg00000807 0.7489341
cg00000884 0.8049008
cg00000905 0.06046822
cg00000924 0.490233
cg00000948 0.8330282

Total number of rows: 485577

Table truncated, full table size 10053 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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