NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM1496803 Query DataSets for GSM1496803
Status Public on Sep 05, 2014
Title 509
Sample type genomic
 
Source name frontal cortex
Organism Homo sapiens
Characteristics disease status (1=control, 2=scz patient): 2
age: 64
pmi (hours): 39
gender: F
sample well: G01
sentrix id: 7878191021
sentrix position: R01C02
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted using the Roche MagNa Pure Compact
Label cy3, cy5
Label protocol Standard Illumina protocol
 
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium HumanMethylation450 Beadchip using standard Illumina protocol
Scan protocol standard Illumina scan settings
Description genomic DNA from frontal cortex
Data processing GenomeStudio v2011.1 with Methylation module 1.9.0 softward
 
Submission date Sep 04, 2014
Last update date Sep 05, 2014
Contact name Joanne Voisey
E-mail(s) j.voisey@qut.edu.au
Organization name Queensland University of Technology
Department IHBI
Street address 60 Musk Ave
City Kelvin Grove
State/province Queensland
ZIP/Postal code 4059
Country Australia
 
Platform ID GPL13534
Series (1)
GSE61107 Genome-wide DNA methylation analysis of human brain tissue from schizophrenia patients

Data table header descriptions
ID_REF
VALUE Average Beta
509.Detection Pval

Data table
ID_REF VALUE 509.Detection Pval
cg00000029 0.6144174 0.0
cg00000108 0.9147084 0.0
cg00000109 0.718425 0.0
cg00000165 0.2628677 0.0
cg00000236 0.7101266 0.0
cg00000289 0.4020744 0.0
cg00000292 0.6619599 0.0
cg00000321 0.6562271 0.0
cg00000363 0.1855558 0.0
cg00000622 0.01780944 0.0
cg00000658 0.8288071 0.0
cg00000714 0.1970124 0.0
cg00000721 0.8331325 0.0
cg00000734 0.08309322 0.0
cg00000769 0.0396333 0.0
cg00000807 0.8870467 0.0
cg00000884 0.8 0.0
cg00000905 0.1396087 0.0
cg00000924 0.4848626 0.0
cg00000948 0.9199246 0.0

Total number of rows: 485577

Table truncated, full table size 12000 Kbytes.




Supplementary file Size Download File type/resource
GSM1496803_7878191021_R01C02_Grn.idat.gz 4.0 Mb (ftp)(http) IDAT
GSM1496803_7878191021_R01C02_Red.idat.gz 4.1 Mb (ftp)(http) IDAT
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap