|
| Status |
Public on Nov 01, 2014 |
| Title |
CP3-T |
| Sample type |
genomic |
| |
|
| Source name |
brain tumor
|
| Organism |
Homo sapiens |
| Characteristics |
p53 status: mut
tumor type: choroid plexus carcinomas
|
| Treatment protocol |
Tumor samples were snap frozen in liquid nitrogen upon resection and stored at -80 oC until DNA extraction.
|
| Growth protocol |
DNA was isolated from fresh-frozen tumor soon after tumor resection
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
DNA from choroid plexus tumor (CPT) tissue was obtained by proteinase K digestion and phenol/chloroform extraction
|
| Label |
biotin
|
| Label protocol |
Standard Illumina protocol (Biotin/DNP)
|
| |
|
| Hybridization protocol |
standard Illumina protocol
|
| Scan protocol |
Illumina iScan System according to the manufacturer's protocol.
|
| Description |
CP3-T
|
| Data processing |
Normalization of raw intensities was conducted with the BMIQ algorithm. Filtering was conducted for probes whose detection p-values were over 0.01, probes containing a SNP, and all probes mapping to the X and Y chromosomes.
|
| |
|
| Submission date |
Sep 03, 2014 |
| Last update date |
Nov 01, 2014 |
| Contact name |
Diana M Merino |
| E-mail(s) |
diana.merino@utoronto.ca
|
| Organization name |
The Hospital for Sick Children
|
| Department |
Genetics and Genome Biology
|
| Lab |
Malkin
|
| Street address |
686 Bay St.
|
| City |
Toronto |
| State/province |
Ontario |
| ZIP/Postal code |
M5V0A4 |
| Country |
Canada |
| |
|
| Platform ID |
GPL13534 |
| Series (1) |
| GSE61044 |
Methylation analysis of choroid plexus tumors |
|
