|
| Status |
Public on Jun 29, 2016 |
| Title |
454_E2 |
| Sample type |
genomic |
| |
|
| Source name |
human induced pluripotent stem cells
|
| Organism |
Homo sapiens |
| Characteristics |
cell type: human induced pluripotent stem cells
|
| Growth protocol |
Human pluripotent stem cells were culture on mitomycin C-treated SNL feeder cells in Primate ES cell medium (ReproCELL) containing 4 ng/mL recombinant bFGF (Wako)
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
GenomicDNA lysates were extracted with DNeasy(R) blood and tissue kit (QIAgen) in accordance with manufacture's protocol.
|
| Label |
Cy5 and Cy3
|
| Label protocol |
Standard Illumina Protocol
|
| |
|
| Hybridization protocol |
Standard Illumina protocol
|
| Scan protocol |
Standard recommended Illumina scanner setting protocol using BeadArray Reader
|
| Description |
human induced pluripotent stem cells derived from dental pulp cell
SAMPLE 12
|
| Data processing |
Illumina GenomeStudio software and GeneSpring (Agilent Techonologies) Unmethylated(Signal_A) and methylated(Signal_B) signal intensities
|
| |
|
| Submission date |
Aug 27, 2014 |
| Last update date |
Jun 29, 2016 |
| Contact name |
Yoshinori Yoshida |
| E-mail(s) |
yoshinor@cira.kyoto-u.ac.jp
|
| Organization name |
Kyoto University
|
| Street address |
53, Kawahara-cho, Shogoin, Sakyo-ku
|
| City |
Kyoto |
| ZIP/Postal code |
6068507 |
| Country |
Japan |
| |
|
| Platform ID |
GPL13534 |
| Series (2) |
| GSE60821 |
Reprogramming-associated aberrant DNA methylation determines hematopoietic differentiation capacity of human induced pluripotent stem cells [undiff_iPSESCs_methylation] |
| GSE60924 |
Reprogramming-associated aberrant DNA methylation determines hematopoietic differentiation capacity of human induced pluripotent stem cells |
|
