|
Status |
Public on Oct 05, 2014 |
Title |
LU876_gene_expression |
Sample type |
RNA |
|
|
Source name |
Lung tumor
|
Organism |
Homo sapiens |
Characteristics |
histological subtype: AC
|
Extracted molecule |
total RNA |
Extraction protocol |
Total RNA from fresh frozen lung tumor tissue was extracted using the Qiagen AllPrep kit according to manufacturer's instructions. RNA concentrations were measured using a Nanodrop (NanoDrop Technologies). RNA integrity was determined by an Agilent Bioanalyzer.
|
Label |
biotin
|
Label protocol |
Illumina®Totalprep-96RNA Amplification kit
|
|
|
Hybridization protocol |
Illumina hybridization protocol
|
Scan protocol |
Standard Illumina iScan scanning protocol; scan setting file: Direct Hyb
|
Data processing |
The data were normalised using quantile normalisation implemented in BASE, http://base.thep.lu.se/
|
|
|
Submission date |
Aug 22, 2014 |
Last update date |
Feb 07, 2017 |
Contact name |
Johan Staaf |
Organization name |
SCIBLU - Swegene Centre for Integrative Biology at Lund University
|
Street address |
Medicon Village
|
City |
Lund |
ZIP/Postal code |
SE-223 81 |
Country |
Sweden |
|
|
Platform ID |
GPL10558 |
Series (2) |
GSE60644 |
Genome-wide DNA methylation analysis of lung carcinoma : Gene expression data |
GSE60645 |
Genome-wide DNA methylation and expression analysis of lung carcinoma |
|
Relations |
Reanalyzed by |
GSM2479200 |