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Sample GSM1484153 Query DataSets for GSM1484153
Status Public on Oct 05, 2014
Title LU866_gene_expression
Sample type RNA
 
Source name Lung tumor
Organism Homo sapiens
Characteristics histological subtype: AC
Extracted molecule total RNA
Extraction protocol Total RNA from fresh frozen lung tumor tissue was extracted using the Qiagen AllPrep kit according to manufacturer's instructions. RNA concentrations were measured using a Nanodrop (NanoDrop Technologies). RNA integrity was determined by an Agilent Bioanalyzer.
Label biotin
Label protocol Illumina®Totalprep-96RNA Amplification kit
 
Hybridization protocol Illumina hybridization protocol
Scan protocol Standard Illumina iScan scanning protocol; scan setting file: Direct Hyb
Data processing The data were normalised using quantile normalisation implemented in BASE, http://base.thep.lu.se/
 
Submission date Aug 22, 2014
Last update date Feb 07, 2017
Contact name Johan Staaf
Organization name SCIBLU - Swegene Centre for Integrative Biology at Lund University
Street address Medicon Village
City Lund
ZIP/Postal code SE-223 81
Country Sweden
 
Platform ID GPL10558
Series (2)
GSE60644 Genome-wide DNA methylation analysis of lung carcinoma : Gene expression data
GSE60645 Genome-wide DNA methylation and expression analysis of lung carcinoma
Relations
Reanalyzed by GSM2479198

Data table header descriptions
ID_REF
VALUE Quantile normalized intensity

Data table
ID_REF VALUE
ILMN_1725881 110.1895218
ILMN_1910180 150.5265503
ILMN_1804174 206.8554535
ILMN_1796063 665.9752808
ILMN_3284771 120.9281311
ILMN_3208259 103.8882904
ILMN_1811966 127.3612518
ILMN_1668162 107.1115875
ILMN_1715600 128.433548
ILMN_1912287 157.2349854
ILMN_1793729 381.9907837
ILMN_2296644 99.66257477
ILMN_1711283 112.3707581
ILMN_1682799 477.1782532
ILMN_3305563 111.2717056
ILMN_3228954 103.8967056
ILMN_3243894 116.6334
ILMN_3246479 114.4885559
ILMN_1665311 116.6334
ILMN_1657235 130.6076202

Total number of rows: 47231

Table truncated, full table size 1148 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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