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Sample GSM1484122 Query DataSets for GSM1484122
Status Public on Oct 05, 2014
Title LU648_gene_expression
Sample type RNA
 
Source name Lung tumor
Organism Homo sapiens
Characteristics histological subtype: AC
Extracted molecule total RNA
Extraction protocol Total RNA from fresh frozen lung tumor tissue was extracted using the Qiagen AllPrep kit according to manufacturer's instructions. RNA concentrations were measured using a Nanodrop (NanoDrop Technologies). RNA integrity was determined by an Agilent Bioanalyzer.
Label biotin
Label protocol Illumina®Totalprep-96RNA Amplification kit
 
Hybridization protocol Illumina hybridization protocol
Scan protocol Standard Illumina iScan scanning protocol; scan setting file: Direct Hyb
Data processing The data were normalised using quantile normalisation implemented in BASE, http://base.thep.lu.se/
 
Submission date Aug 22, 2014
Last update date Feb 07, 2017
Contact name Johan Staaf
Organization name SCIBLU - Swegene Centre for Integrative Biology at Lund University
Street address Medicon Village
City Lund
ZIP/Postal code SE-223 81
Country Sweden
 
Platform ID GPL10558
Series (2)
GSE60644 Genome-wide DNA methylation analysis of lung carcinoma : Gene expression data
GSE60645 Genome-wide DNA methylation and expression analysis of lung carcinoma
Relations
Reanalyzed by GSM2479158

Data table header descriptions
ID_REF
VALUE Quantile normalized intensity

Data table
ID_REF VALUE
ILMN_1725881 115.0909576
ILMN_1910180 174.1804962
ILMN_1804174 179.9901581
ILMN_1796063 1165.88623
ILMN_3284771 116.1901855
ILMN_3208259 117.2736588
ILMN_1811966 140.9390564
ILMN_1668162 102.5910263
ILMN_1715600 117.2736588
ILMN_1912287 149.4041443
ILMN_1793729 522.5059814
ILMN_2296644 104.6548843
ILMN_1711283 121.2892227
ILMN_1682799 449.622345
ILMN_3305563 109.8748245
ILMN_3228954 118.2448578
ILMN_3243894 120.26754
ILMN_3246479 106.6662064
ILMN_1665311 120.26754
ILMN_1657235 134.6801758

Total number of rows: 47231

Table truncated, full table size 1148 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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