|
| Status |
Public on Oct 05, 2014 |
| Title |
LU1040_gene_expression |
| Sample type |
RNA |
| |
|
| Source name |
Lung tumor
|
| Organism |
Homo sapiens |
| Characteristics |
histological subtype: SqCC
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Total RNA from fresh frozen lung tumor tissue was extracted using the Qiagen AllPrep kit according to manufacturer's instructions. RNA concentrations were measured using a Nanodrop (NanoDrop Technologies). RNA integrity was determined by an Agilent Bioanalyzer.
|
| Label |
biotin
|
| Label protocol |
Illumina®Totalprep-96RNA Amplification kit
|
| |
|
| Hybridization protocol |
Illumina hybridization protocol
|
| Scan protocol |
Standard Illumina iScan scanning protocol; scan setting file: Direct Hyb
|
| Data processing |
The data were normalised using quantile normalisation implemented in BASE, http://base.thep.lu.se/
|
| |
|
| Submission date |
Aug 22, 2014 |
| Last update date |
Feb 07, 2017 |
| Contact name |
Johan Staaf |
| Organization name |
SCIBLU - Swegene Centre for Integrative Biology at Lund University
|
| Street address |
Medicon Village
|
| City |
Lund |
| ZIP/Postal code |
SE-223 81 |
| Country |
Sweden |
| |
|
| Platform ID |
GPL10558 |
| Series (2) |
| GSE60644 |
Genome-wide DNA methylation analysis of lung carcinoma : Gene expression data |
| GSE60645 |
Genome-wide DNA methylation and expression analysis of lung carcinoma |
|
| Relations |
| Reanalyzed by |
GSM2479053 |
