|
Status |
Public on Nov 29, 2014 |
Title |
M_B7_BA7163 |
Sample type |
genomic |
|
|
Source name |
final male sample from brain7
|
Organism |
Homo sapiens |
Characteristics |
given_sex: M healthy_vs_disease: healthy sentrix_id: 6285641035 sentrix_position: R02C01 xist_avgs_dnam: 0.917777938589908 sex_code: M tissue_id: B7 tissue_name: brain7 sample in final analysis: final male sample
|
Extracted molecule |
genomic DNA |
Extraction protocol |
Genomic DNA was isolated using Qiagen AllPrep DNA/RNA mini kit according to manufacturer's instructions.
|
Label |
Cy3 and Cy5
|
Label protocol |
Standard Illumina Protocol
|
|
|
Hybridization protocol |
Bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
|
Scan protocol |
BeadChips were imaged using HiScan with standard recommended Illumina scanner setting
|
Data processing |
Raw intensities extracted using GenomeStudio v2010.1. Background normalization was conducted by subtracting averaged negative probe intensity from signal A and B.
|
|
|
Submission date |
Aug 08, 2014 |
Last update date |
Nov 29, 2014 |
Contact name |
Carolyn J Brown |
E-mail(s) |
cbrown@ubc.ca
|
Organization name |
University of British Columbia
|
Department |
Medical Genetics
|
Lab |
Brown Lab
|
Street address |
2350 Health Sciences Mall
|
City |
Vancouver |
State/province |
British Columbia |
ZIP/Postal code |
V6T1Z3 |
Country |
Canada |
|
|
Platform ID |
GPL13534 |
Series (1) |
GSE60275 |
Landscape of DNA methylation on the X chromosome reflects CpG density, functional chromatin state and X-chromosome inactivation. |
|