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Sample GSM1463382 Query DataSets for GSM1463382
Status Public on Jan 01, 2015
Title 9247377111_R04C01
Sample type genomic
 
Source name gDNA from normal PBMC
Organism Homo sapiens
Characteristics gender: MALE
phenotype: Peanut.sensitized
challenge outcome: sensitized
Treatment protocol NA
Growth protocol untouched cells rested for 48 hours in RPMI media (serum free)
Extracted molecule genomic DNA
Extraction protocol DNA purified using Qiagen All prep column extraction method
Label Cy5 and Cy3
Label protocol Cy5 and Cy3
 
Hybridization protocol Infinium Methylation Assay according to manufacturers protocol (Illumina)
Scan protocol iScan system
Data processing idat files processed in Minfi normalized using the stratified quantile normalization method. Sex probes removed, cross hybridizing probes removed, poor quality probes removed, SNP probes (MAF < 0.05 at extension site) removed
 
Submission date Aug 01, 2014
Last update date Jan 01, 2015
Contact name David Martino
E-mail(s) david.martino@telethonkids.org.au
Phone 0863191635
Organization name Telethon Kids Institute
Street address Perth Childrens Hospital, 15 Hospital Avenue
City NEDLANDS
State/province Western Australia
ZIP/Postal code 6009
Country Australia
 
Platform ID GPL13534
Series (1)
GSE59999 Blood DNA methylation biomarkers predict clinical reactivity in food-sensitized infants

Data table header descriptions
ID_REF
VALUE Normalized Beta processed as described above

Data table
ID_REF VALUE
cg13938959 0.762051285547149
cg23733394 0.471664052708775
cg08900511 0.888161675565886
cg04410003 0.902375060422634
cg18762746 0.944128559284833
cg12726839 0.387947830363561
cg04364728 0.207576574589246
cg05151709 0.437499525034388
cg08546707 0.692795352699421
cg06154531 0.896415418651293
cg01782097 0.63877198213567
cg20825023 0.44955669986375
cg12549180 0.752415508147206
cg11851804 0.181788844948778
cg06623778 0.384336633663366
cg14528386 0.457169426660467
cg17436295 0.808709931247336
cg18865112 0.916176165727426
cg19642727 0.901054399382702
cg21407818 0.913066465979825

Total number of rows: 405658

Table truncated, full table size 11448 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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