|
Status |
Public on Jan 01, 2015 |
Title |
9247377111_R03C01 |
Sample type |
genomic |
|
|
Source name |
gDNA from normal PBMC
|
Organism |
Homo sapiens |
Characteristics |
gender: MALE phenotype: Non.allergic challenge outcome: nonallergic
|
Treatment protocol |
NA
|
Growth protocol |
untouched cells rested for 48 hours in RPMI media (serum free)
|
Extracted molecule |
genomic DNA |
Extraction protocol |
DNA purified using Qiagen All prep column extraction method
|
Label |
Cy5 and Cy3
|
Label protocol |
Cy5 and Cy3
|
|
|
Hybridization protocol |
Infinium Methylation Assay according to manufacturers protocol (Illumina)
|
Scan protocol |
iScan system
|
Data processing |
idat files processed in Minfi normalized using the stratified quantile normalization method. Sex probes removed, cross hybridizing probes removed, poor quality probes removed, SNP probes (MAF < 0.05 at extension site) removed
|
|
|
Submission date |
Aug 01, 2014 |
Last update date |
Jan 01, 2015 |
Contact name |
David Martino |
E-mail(s) |
david.martino@telethonkids.org.au
|
Phone |
0863191635
|
Organization name |
Telethon Kids Institute
|
Street address |
Perth Childrens Hospital, 15 Hospital Avenue
|
City |
NEDLANDS |
State/province |
Western Australia |
ZIP/Postal code |
6009 |
Country |
Australia |
|
|
Platform ID |
GPL13534 |
Series (1) |
GSE59999 |
Blood DNA methylation biomarkers predict clinical reactivity in food-sensitized infants |
|