|
| Status |
Public on Nov 30, 2014 |
| Title |
TU_IDC_5 |
| Sample type |
genomic |
| |
|
| Source name |
PrimaryTumorTissue
|
| Organism |
Homo sapiens |
| Characteristics |
tissue type: Tumor
tissue subtype: Invasive ductal breast carcinoma
sample type: fresh-frozen
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
DNA was extracted by Proteinase K treatment with subsequent phenol-chloroform extraction
|
| Label |
Cy3 and Cy5
|
| Label protocol |
Standard Illumina Protocol
|
| |
|
| Hybridization protocol |
Bisulfite converted genomic DNA was amplified, fragmented, and hybridized to Illumina´s Infinium HumanMethylation450 BeadChip according to the manufacturer’s protocol
|
| Scan protocol |
Arrays were scanned using BeadArray Reader according to the manufacturer´s instructions
|
| Description |
6929689048_R01C01
|
| Data processing |
GenomeStudio® Methylation module software (version 1.9, Illumina Inc.) was used to calculate beta-values and corresponding p-values, by normalizing over internal controls
|
| |
|
| Submission date |
Jul 30, 2014 |
| Last update date |
Nov 30, 2014 |
| Contact name |
Jessica Rößler |
| Organization name |
Medical School Hannover
|
| Department |
Pathology
|
| Street address |
Carl-Neuberg Str. 1
|
| City |
Hannover |
| ZIP/Postal code |
30625 |
| Country |
Germany |
| |
|
| Platform ID |
GPL13534 |
| Series (2) |
| GSE59901 |
DNA methylation study in breast cancer [methylation] |
| GSE59903 |
DNA methylation study in breast cancer |
|
