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Sample GSM1438810 Query DataSets for GSM1438810
Status Public on Jul 19, 2014
Title VAT_5958091029_R06C02
Sample type genomic
 
Source name Visceral adipose tissue
Organism Homo sapiens
Characteristics Sex: Male
Growth protocol Visceral adipose tissue was obtained during biliopancreatic diversion surgery, rapidly frozen in liquid N2 and stored at -80 oC.
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was extracted from the VAT using the DNeasy Blood & Tissue kit, as recommended by the manufacturer
Label biotin
Label protocol Illumina protocol
 
Hybridization protocol Illumina protocol
Scan protocol Illumina protocol
Data processing The GenomeStudio software version 2011.1 (Illumina Inc.) and the Methylation Module were used.
Normalization method described in: Fortin, J.-P. et al. Functional normalization of 450k methylation array data improves replication in large cancer studies. bioRxiv (2014).
 
Submission date Jul 17, 2014
Last update date Jul 19, 2014
Contact name Frederic Guenard
Organization name Laval University
Street address 2440, Hochelage blvd
City Quebec
ZIP/Postal code G1V 0A6
Country Canada
 
Platform ID GPL13534
Series (1)
GSE59524 Characterization of Functional Methylomes by Different Methods to Identify Novel Disease Associated Variants

Data table header descriptions
ID_REF
VALUE Normalized average beta
5958091029_R06C02.Detection Pval

Data table
ID_REF VALUE 5958091029_R06C02.Detection Pval
cg00000029 0.38202326 0.00
cg00000108 0.946772611 0.00
cg00000109 0.896663407 0.00
cg00000165 0.250918431 0.00
cg00000236 0.845871929 0.00
cg00000289 0.769458435 0.00
cg00000292 0.787857683 0.00
cg00000321 0.389759324 0.00
cg00000363 0.313382102 0.00
cg00000622 0.011682484 0.00
cg00000658 0.911348042 0.00
cg00000714 0.161316853 0.00
cg00000721 0.953289072 0.00
cg00000734 0.106749548 0.00
cg00000769 0.038562138 0.00
cg00000807 0.858795379 0.00
cg00000884 0.93129496 0.00
cg00000905 0.140043972 0.00
cg00000924 0.48963195 0.00
cg00000948 0.930403547 0.00

Total number of rows: 485577

Table truncated, full table size 13233 Kbytes.




Supplementary file Size Download File type/resource
GSM1438810_5958091029_R06C02_Grn.idat.gz 4.2 Mb (ftp)(http) IDAT
GSM1438810_5958091029_R06C02_Red.idat.gz 4.1 Mb (ftp)(http) IDAT
Processed data included within Sample table
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