NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM1438553 Query DataSets for GSM1438553
Status Public on May 26, 2015
Title genomic DNA from saliva of male 30M08
Sample type genomic
 
Source name male_30s_saliva
Organism Homo sapiens
Characteristics age (yrs): 32
gender: Male
ethnicity: Korean-Asian
tissue: saliva
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted using QIAamp DNA Investigator Kit and Mini Kit
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
 
Hybridization protocol bisulfite converted DNA was amplified, fagmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description 30M08SA
Data processing BeadStudio software v3.2; the non_normalized.txt contains unmethylated and methylated signal intensities
 
Submission date Jul 17, 2014
Last update date May 26, 2015
Contact name Hwan Young Lee
E-mail(s) hylee192@snu.ac.kr
Phone +82-2-740-8352
Organization name Seoul National University College of Medicine
Department Forensic Medicine
Street address 103 Daehak-ro, Jongno-gu
City Seoul
ZIP/Postal code 03080
Country South Korea
 
Platform ID GPL13534
Series (2)
GSE59508 Genome-wide methylation profiles of forensically relevant body fluids [Set3]
GSE59509 Genome-wide methylation profiles of forensically relevant body fluids

Data table header descriptions
ID_REF
VALUE Average Beta
Detection Pval

Data table
ID_REF VALUE Detection Pval
cg00000029 0.3399416 0
cg00000108 0.9343927 0
cg00000109 0.8627293 0
cg00000165 0.2355822 0
cg00000236 0.8488703 0
cg00000289 0.6451229 0
cg00000292 0.6518306 0
cg00000321 0.4055427 0
cg00000363 0.2270888 0
cg00000622 0.01765081 0
cg00000658 0.8089005 0
cg00000714 0.1431447 0
cg00000721 0.921845 0
cg00000734 0.1179454 0
cg00000769 0.0498787 0
cg00000807 0.8665576 0
cg00000884 0.83214 0
cg00000905 0.09635536 0
cg00000924 0.5672646 0
cg00000948 0.8813614 0

Total number of rows: 485577

Table truncated, full table size 10978 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap