|
| Status |
Public on Nov 26, 2014 |
| Title |
Nrl-KO rep3 |
| Sample type |
SRA |
| |
|
| Source name |
Osteosarcoma
|
| Organism |
Homo sapiens |
| Characteristics |
group: PDX
cell type: osteosarcoma
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
Xenografts extracted and washed in PBS; DNA extracted with Qiagen kit a sper manufacturer's instructions
MeDIP with Diagenode Auto-MeDIP kit; library constructed using NEB reagents
|
| |
|
| Library strategy |
MeDIP-Seq |
| Library source |
genomic |
| Library selection |
5-methylcytidine antibody |
| Instrument model |
Illumina HiSeq 2000 |
| |
|
| Description |
tumour sample
T1X1
|
| Data processing |
MeDUSA
Genome_build: hg19
Supplementary_files_format_and_content: bed files with coordinates of enriched regions
|
| |
|
| Submission date |
Jul 11, 2014 |
| Last update date |
May 15, 2019 |
| Contact name |
Paul Guilhamon |
| Organization name |
SickKids
|
| Street address |
686 Bay Street
|
| City |
Toronto |
| State/province |
ON |
| ZIP/Postal code |
M5G0A4 |
| Country |
Canada |
| |
|
| Platform ID |
GPL11154 |
| Series (2) |
| GSE59351 |
Assessment of patient-derived tumour xenografts (PDXs) as a discovery tool for cancer epigenomics [meDIP-seq] |
| GSE59352 |
Assessment of patient-derived tumour xenografts (PDXs) as a discovery tool for cancer epigenomics |
|
| Relations |
| BioSample |
SAMN02910223 |
| SRA |
SRX651515 |
