|
| Status |
Public on Apr 07, 2015 |
| Title |
genomic DNA from SJOS001105_D1 |
| Sample type |
genomic |
| |
|
| Source name |
tissue
|
| Organism |
Homo sapiens |
| Characteristics |
gender: female
sample type: tissue
disease state: osteosarcoma
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
genomic DNA was extracted and purified from fresh frozen osteosarcoma primary tumor samples using Qiagen DNeasy Kit according to standard instructions.
|
| Label |
Cy5 and Cy3
|
| Label protocol |
Infinium HD Assay Methylation Protocol
|
| |
|
| Hybridization protocol |
bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450K Beadchip using standard Illumina protocol
|
| Scan protocol |
Arrays were imaged using Illumina HiScan Array Scanner using the default scanner setting
|
| Description |
osteosarcoma sample
|
| Data processing |
GenomeStudio Methylation Module 1.9.0
|
| |
|
| Submission date |
Jun 24, 2014 |
| Last update date |
Apr 07, 2015 |
| Contact name |
Chunxu Qu |
| E-mail(s) |
chunxu.qu@stjude.org
|
| Phone |
9015952433
|
| Organization name |
St Jude Children's Research Institute
|
| Department |
Pathology
|
| Lab |
Mullighan
|
| Street address |
262 Danny Thomas Pl
|
| City |
Memphis |
| State/province |
TN |
| ZIP/Postal code |
38105 |
| Country |
USA |
| |
|
| Platform ID |
GPL13534 |
| Series (1) |
| GSE58770 |
A Sleeping Beauty Forward Genetic Screen Identifies Genes Promoting Osteosarcoma Development and Metastasis |
|
