|
| Status |
Public on Sep 24, 2014 |
| Title |
Genomic DNA from LC21 at T1 |
| Sample type |
genomic |
| |
|
| Source name |
Case at T1
|
| Organism |
Homo sapiens |
| Characteristics |
cell type: lymphocyte cells (LC)
gender: female
disease state: alcohol consumption
sample type: case
time point: T1
individual: 21
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
Genomic DNA was extracted and purified from LC samples using the QIAmp DNA Blood Mini Kit according to standard instructions.
|
| Label |
Cy5 and Cy3
|
| Label protocol |
Standard Illumina protocol.
|
| |
|
| Hybridization protocol |
Bisulfite-converted DNA was amplified, fragmented and hybridized to Illumina Infinium Human Methylation450 BeadChip using the standard Illumina protocol.
|
| Scan protocol |
Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting.
|
| Description |
Sample 31
LC21-1
Case at T1 LC sample.
|
| Data processing |
Genome Studios V2011.1.
|
| |
|
| Submission date |
May 20, 2014 |
| Last update date |
Sep 24, 2014 |
| Contact name |
Robert Alan Philibert |
| E-mail(s) |
robert-philibert@uiowa.edu
|
| Organization name |
University of Iowa
|
| Street address |
500 Newton Rd
|
| City |
Iowa City |
| State/province |
IA |
| ZIP/Postal code |
52242 |
| Country |
USA |
| |
|
| Platform ID |
GPL13534 |
| Series (1) |
| GSE57853 |
Epigenome analysis of alcohol consumption in lymphocyte cell (LC) samples |
|
