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Sample GSM1381932 Query DataSets for GSM1381932
Status Public on May 08, 2014
Title BRAA D1B
Sample type other
 
Source name BRAA from B-Cells isolated from Mouse Spleen Cells
Organism Mus musculus
Characteristics strain: MRL/lpr
cell type: B cell
antigenic target: Autoreactive to brain antigen
Treatment protocol Not applicable
Growth protocol Brain-reactive autoantibodies were created using hybridoma technology. The B-cells from an autoimmune mouse and myeloma cells were fused and cultured.
Extracted molecule other
Extraction protocol The antibodies produced in the supernant from these hybridomas were tested for reactivity to brain antigen using ELISA and those antibodies that displayed reactivity above 0.1 OD were retained for testing on microarray.
Label Alexafluor 647
Label protocol Brain-reactive autoantibodies bound to the arrays were detected using goat anti-mouse IgG biotinylated secondary antibody followed by streptavidin conjugated with AlexaFluor 647.
 
Hybridization protocol Each slide was blocked with buffer containing mercaptohexanol for one hour followed by a one hour incubation with each monoclonal antibody. The slides were washed with TBST and then incubated with 6.67μM of goat anti-mouse IgG biotinylated secondary antibody at 37oC for one hour. 5nM of streptavidin conjugated with AlexaFluor 647 was added to the slides, the slides were washed and then spun dry before scanning.
Scan protocol A Perkin Elmer Scan Array laser Scanner was used to scanned the slides (543nm emission, 565 nm absorption, 75% PMT, 100% laser power).
Description Goat anti-mouse IgG biotinylated secondary antibody was added followed by streptavidin conjugated with AlexaFluor 647.
Data processing GenePix Pro 6.0 was used to produce a gpr file that was analyzed in GeneSpring 7.3.1.
 
Submission date May 07, 2014
Last update date May 08, 2014
Contact name Phillip Stafford
E-mail(s) phillip.stafford@asu.edu
Organization name Biodesign Institute
Department Center for Innovations in Medicine
Lab Biostatistics
Street address 1001 S. McAllister
City Phoenix
State/province AZ
ZIP/Postal code 85287
Country USA
 
Platform ID GPL17600
Series (1)
GSE57389 Diagnosis and early detection of CNS-SLE in MRL/lpr mice using peptide microarrays (GPL17600)

Data table header descriptions
ID_REF
VALUE Fluorescence intensity.

Data table
ID_REF VALUE
1 2058
2 136
3 2603
4 134
5 2487
6 117
7 2383
8 119
9 118
10 117
11 256
12 151
13 136
14 122
15 98
16 109
17 112
18 112
19 118
20 120

Total number of rows: 10400

Table truncated, full table size 90 Kbytes.




Supplementary data files not provided
Processed data not provided for this record

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