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Sample GSM1381025 Query DataSets for GSM1381025
Status Public on Jan 22, 2016
Title Control G07_145
Sample type genomic
 
Source name Brain
Organism Homo sapiens
Characteristics condition: Control
gender: Male
health state: Healthy
age: 64
tissue: BA9 Grey matter
Treatment protocol Untreated.
Growth protocol N/A. Primary patient samples.
Extracted molecule genomic DNA
Extraction protocol DNA extracted by Phenol:Chloroform:Isoamylalcohol (Sigma)
Label Cy3, Cy5
Label protocol Standard Illumina labelling protocol
 
Hybridization protocol Bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using High Scan SQ using standard recommended Illumina scanner setting
Data processing Genome Studio V2011.2
 
Submission date May 06, 2014
Last update date Jan 22, 2016
Contact name Manel Esteller
Organization name IDIBELL
Department PEBC
Lab Cancer Epigenetics
Street address Hospital Duran i Reynals Av. Gran Via s/n km, 2.7
City L'Hospitalet de Llobregat
State/province Barcelona
ZIP/Postal code 08908
Country Spain
 
Platform ID GPL13534
Series (2)
GSE57360 Genome-scale profiling of the DNA methylation landscape in human neurological disorders (BeadChip)
GSE57361 Genome-scale profiling of the DNA methylation landscape in human neurological disorders

Data table header descriptions
ID_REF
VALUE Average Beta
G07_145_pval

Data table
ID_REF VALUE G07_145_pval
cg00050873 0.0204238000248029 0.803545828765236
cg00212031 0.458038353755548 0.385036531055221
cg00213748 0.156555800102039 0.330541290154052
cg00214611 0.494753790203557 0.83317050976938
cg00455876 0.18215074692205 0.10400624145382
cg01707559 0.281286939246025 0
cg02004872 0.257967974102194 0
cg02011394 0 0.685588817342822
cg02050847 0 0.965309955550164
cg02233190 0 0.271051519475881
cg02494853 0.0129513180321701 0
cg02839557 0.0750704068744733 0.876542638497749
cg02842889 0.0193407953773353 0.81111872849364
cg03052502 0.486184846564469 0.716785010783108
cg03155755 0.509045238676501 0.0980446253192274
cg03244189 0.122996985431266 0
cg03443143 0.286382561162266 0.330541290154052
cg03683899 0.0703853448684927 0.55160197034635
cg03695421 0.122431404228592 1.70974345792274e-13
cg03706273 0.00905246802485951 0

Total number of rows: 485512

Table truncated, full table size 14765 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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