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Sample GSM1373747 Query DataSets for GSM1373747
Status Public on Apr 25, 2014
Title N-4
Sample type RNA
 
Source name placenta
Organism Homo sapiens
Characteristics tissue: villous tissue
group: normal
Treatment protocol N/A
Growth protocol N/A
Extracted molecule total RNA
Extraction protocol Trizol was used to extract total RNA.
Label biotin
Label protocol Biotinylated template was prepared according to the standard Affymetrix protocol from 1 ug total RNA (FlashTag Biotin HSR RNA Labeling Kit, Affymetrix).
 
Hybridization protocol Following fragmentation, 1 ug of labeled product was hybridized for 18 hr at 48° C on GeneChip miRNA 2.0 arrays . GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
Scan protocol GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 7G
Data processing The data were analyzed with Expression Console 1.2 using RMA + DABG as the normalization method.
 
Submission date Apr 24, 2014
Last update date Apr 25, 2014
Contact name Yuping Wang
E-mail(s) ywang1@lsuhsc.edu
Phone 318-675-5379
Organization name LSUHSC-Shreveport
Department OB/GYN
Street address 1501 Kings Hwy
City Shreveport
State/province LA
ZIP/Postal code 71103
Country USA
 
Platform ID GPL14613
Series (1)
GSE57050 miRNA Profile in Normal and Preeclamptic Placenta

Data table header descriptions
ID_REF
VALUE Linear RMA Signal

Data table
ID_REF VALUE
14q0_st 449.5239
14qI-1_st 30.35102
14qI-1_x_st 22.31393
14qI-2_st 2.582735
14qI-3_x_st 74.86823
14qI-4_st 507.1642
14qI-4_x_st 482.3577
14qI-5_st 10.66646
14qI-6_st 4.784473
14qI-6_x_st 25.09982
14qI-7_st 500.2403
14qI-8_st 8.738643
14qI-8_x_st 92.14537
14qI-9_x_st 332.2258
14qII-10_st 2.582735
14qII-10_x_st 2.447508
14qII-11_st 3.58486
14qII-11_x_st 3.288983
14qII-12_st 861.0973
14qII-12_x_st 803.8421

Total number of rows: 4592

Table truncated, full table size 121 Kbytes.




Supplementary file Size Download File type/resource
GSM1373747_N-7_miRNA-2_0_.CEL.gz 749.7 Kb (ftp)(http) CEL
Processed data included within Sample table

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