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Sample GSM1373745 Query DataSets for GSM1373745
Status Public on Apr 25, 2014
Title N-2
Sample type RNA
 
Source name placenta
Organism Homo sapiens
Characteristics tissue: villous tissue
group: normal
Treatment protocol N/A
Growth protocol N/A
Extracted molecule total RNA
Extraction protocol Trizol was used to extract total RNA.
Label biotin
Label protocol Biotinylated template was prepared according to the standard Affymetrix protocol from 1 ug total RNA (FlashTag Biotin HSR RNA Labeling Kit, Affymetrix).
 
Hybridization protocol Following fragmentation, 1 ug of labeled product was hybridized for 18 hr at 48° C on GeneChip miRNA 2.0 arrays . GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
Scan protocol GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 7G
Data processing The data were analyzed with Expression Console 1.2 using RMA + DABG as the normalization method.
 
Submission date Apr 24, 2014
Last update date Apr 25, 2014
Contact name Yuping Wang
E-mail(s) ywang1@lsuhsc.edu
Phone 318-675-5379
Organization name LSUHSC-Shreveport
Department OB/GYN
Street address 1501 Kings Hwy
City Shreveport
State/province LA
ZIP/Postal code 71103
Country USA
 
Platform ID GPL14613
Series (1)
GSE57050 miRNA Profile in Normal and Preeclamptic Placenta

Data table header descriptions
ID_REF
VALUE Linear RMA Signal

Data table
ID_REF VALUE
14q0_st 675.7272
14qI-1_st 14.33692
14qI-1_x_st 12.66175
14qI-2_st 2.746101
14qI-3_x_st 90.67375
14qI-4_st 706.6021
14qI-4_x_st 661.3601
14qI-5_st 18.04758
14qI-6_st 6.905107
14qI-6_x_st 32.24324
14qI-7_st 501.6473
14qI-8_st 9.740236
14qI-8_x_st 100.4816
14qI-9_x_st 344.6911
14qII-10_st 2.498786
14qII-10_x_st 2.630356
14qII-11_st 3.93201
14qII-11_x_st 3.942098
14qII-12_st 1179.16
14qII-12_x_st 1139.253

Total number of rows: 4592

Table truncated, full table size 121 Kbytes.




Supplementary file Size Download File type/resource
GSM1373745_N-3_miRNA-2_0_.CEL.gz 753.5 Kb (ftp)(http) CEL
Processed data included within Sample table

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