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GEO accession:
Sample GSM136415
Query DataSets for GSM136415
Status
Public on Sep 30, 2007
Title
LCM tumor epithelium sample from patient #34
Sample type
RNA
Source name
human breast cancer tumor epithelium
Organism
Homo sapiens
Characteristics
diagnosis: non-IBC
status: Deceased
patient_id: 34
race: African American
tnm_stage: IIIA
er_status: NEG
tissue: Tumor
Extracted molecule
total RNA
Extraction protocol
PicoPure kit (Arcturus)
Label
biotin
Label protocol
Small Sample Labeling Protocol vII from Affymetrix
Hybridization protocol
Standard Affy protocol
Scan protocol
Standard Affy protocol
Description
Chemo: Yes, ER: NEG, Her2Neu: U, Stage: IIIA, Cyclin E: unknown
Data processing
RMA
Submission date
Sep 15, 2006
Last update date
Feb 17, 2016
Contact name
Stefan Ambs
Organization name
NCI
Lab
LHC
Street address
37 Convent Dr Bldg 37 Room 3050
City
Bethesda
State/province
MD
ZIP/Postal code
20892
Country
USA
Platform ID
GPL96
Series (1)
GSE5847
Tumor and stroma from breast by LCM
Relations
Reanalyzed by
GSE47561
Data table header descriptions
ID_REF
Affy ID
VALUE
RMA log 2 expression levels
Data table
ID_REF
VALUE
1007_s_at
10.25019846
1053_at
5.690716396
117_at
6.602683823
121_at
8.275578928
1255_g_at
4.182035641
1294_at
8.266729858
1316_at
6.320580027
1320_at
5.174259919
1405_i_at
7.981696883
1431_at
4.223048785
1438_at
7.161232896
1487_at
7.301743143
1494_f_at
6.740377858
1598_g_at
10.68323112
160020_at
7.829633963
1729_at
8.301721925
1773_at
5.256689524
177_at
5.500947455
179_at
8.651230527
1861_at
5.519357676
Total number of rows:
22283
Table truncated, full table size
496 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM136415.CEL.gz
3.3 Mb
(ftp)
(http)
CEL
Processed data included within Sample table
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