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GEO accession:
Sample GSM136413
Query DataSets for GSM136413
Status
Public on Sep 30, 2007
Title
LCM tumor epithelium sample from patient #26
Sample type
RNA
Source name
human breast cancer tumor epithelium
Organism
Homo sapiens
Characteristics
diagnosis: non-IBC
status: Deceased
patient_id: 26
race: African American
tnm_stage: I
er_status: NEG
tissue: Tumor
Extracted molecule
total RNA
Extraction protocol
PicoPure kit (Arcturus)
Label
biotin
Label protocol
Small Sample Labeling Protocol vII from Affymetrix
Hybridization protocol
Standard Affy protocol
Scan protocol
Standard Affy protocol
Description
Chemo: No, ER: NEG, Her2Neu: NEG, Stage: I, Cyclin E: POS
Data processing
RMA
Submission date
Sep 15, 2006
Last update date
Feb 17, 2016
Contact name
Stefan Ambs
Organization name
NCI
Lab
LHC
Street address
37 Convent Dr Bldg 37 Room 3050
City
Bethesda
State/province
MD
ZIP/Postal code
20892
Country
USA
Platform ID
GPL96
Series (1)
GSE5847
Tumor and stroma from breast by LCM
Relations
Reanalyzed by
GSE47561
Data table header descriptions
ID_REF
Affy ID
VALUE
RMA log 2 expression levels
Data table
ID_REF
VALUE
1007_s_at
10.56234743
1053_at
5.731007129
117_at
6.420450406
121_at
8.177013955
1255_g_at
4.117592423
1294_at
7.940406538
1316_at
7.210801638
1320_at
4.888669092
1405_i_at
7.459612643
1431_at
4.224095186
1438_at
6.855207218
1487_at
7.562346031
1494_f_at
6.579045244
1598_g_at
10.06843231
160020_at
7.722925385
1729_at
8.491251575
1773_at
5.173510101
177_at
5.057988126
179_at
8.582154185
1861_at
5.310715104
Total number of rows:
22283
Table truncated, full table size
496 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM136413.CEL.gz
3.4 Mb
(ftp)
(http)
CEL
Processed data included within Sample table
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