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GEO accession:
Sample GSM136411
Query DataSets for GSM136411
Status
Public on Sep 30, 2007
Title
LCM tumor epithelium sample from patient #24
Sample type
RNA
Source name
human breast cancer tumor epithelium
Organism
Homo sapiens
Characteristics
diagnosis: non-IBC
status: Deceased
patient_id: 24
race: African American
tnm_stage: IIA
er_status: POS
tissue: Tumor
Extracted molecule
total RNA
Extraction protocol
PicoPure kit (Arcturus)
Label
biotin
Label protocol
Small Sample Labeling Protocol vII from Affymetrix
Hybridization protocol
Standard Affy protocol
Scan protocol
Standard Affy protocol
Description
Chemo: No, ER: POS, Her2Neu: U, Stage: IIA, Cyclin E: unknown
Data processing
RMA
Submission date
Sep 15, 2006
Last update date
Feb 17, 2016
Contact name
Stefan Ambs
Organization name
NCI
Lab
LHC
Street address
37 Convent Dr Bldg 37 Room 3050
City
Bethesda
State/province
MD
ZIP/Postal code
20892
Country
USA
Platform ID
GPL96
Series (1)
GSE5847
Tumor and stroma from breast by LCM
Relations
Reanalyzed by
GSE47561
Data table header descriptions
ID_REF
Affy ID
VALUE
RMA log 2 expression levels
Data table
ID_REF
VALUE
1007_s_at
10.679646
1053_at
5.684670595
117_at
6.418576256
121_at
8.253583411
1255_g_at
4.143628046
1294_at
8.508860939
1316_at
6.385949024
1320_at
4.994187946
1405_i_at
8.220874251
1431_at
4.270618289
1438_at
6.771514605
1487_at
7.685090353
1494_f_at
6.807560636
1598_g_at
9.783685923
160020_at
7.770219001
1729_at
8.154463179
1773_at
5.367690675
177_at
5.184733392
179_at
8.867649567
1861_at
5.730349948
Total number of rows:
22283
Table truncated, full table size
496 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM136411.CEL.gz
3.4 Mb
(ftp)
(http)
CEL
Processed data included within Sample table
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