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GEO accession:
Sample GSM136404
Query DataSets for GSM136404
Status
Public on Sep 30, 2007
Title
LCM tumor epithelium sample from patient #17
Sample type
RNA
Source name
human breast cancer tumor epithelium
Organism
Homo sapiens
Characteristics
diagnosis: non-IBC
status: Deceased
patient_id: 17
race: European American
tnm_stage: I
er_status: POS
tissue: Tumor
Extracted molecule
total RNA
Extraction protocol
PicoPure kit (Arcturus)
Label
biotin
Label protocol
Small Sample Labeling Protocol vII from Affymetrix
Hybridization protocol
Standard Affy protocol
Scan protocol
Standard Affy protocol
Description
Chemo: No, ER: POS, Her2Neu: NEG, Stage: I, Cyclin E: NEG
Data processing
RMA
Submission date
Sep 15, 2006
Last update date
Feb 17, 2016
Contact name
Stefan Ambs
Organization name
NCI
Lab
LHC
Street address
37 Convent Dr Bldg 37 Room 3050
City
Bethesda
State/province
MD
ZIP/Postal code
20892
Country
USA
Platform ID
GPL96
Series (1)
GSE5847
Tumor and stroma from breast by LCM
Relations
Reanalyzed by
GSE47561
Data table header descriptions
ID_REF
Affy ID
VALUE
RMA log 2 expression levels
Data table
ID_REF
VALUE
1007_s_at
9.72030765
1053_at
5.699519967
117_at
6.489043023
121_at
8.66918163
1255_g_at
4.22869316
1294_at
7.895352989
1316_at
7.017536289
1320_at
4.900083984
1405_i_at
7.110859141
1431_at
4.229383803
1438_at
6.857076527
1487_at
7.563477966
1494_f_at
6.749131581
1598_g_at
9.705684909
160020_at
7.757144941
1729_at
8.414599669
1773_at
5.294447588
177_at
5.946624456
179_at
8.695894939
1861_at
5.759577163
Total number of rows:
22283
Table truncated, full table size
496 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM136404.CEL.gz
3.3 Mb
(ftp)
(http)
CEL
Processed data included within Sample table
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